Elizabeth Hadly

Paul S. and Billie Achilles Professor in Environmental Biology, Senior Fellow at the Woods Institute for the Environment and Professor, by courtesy, of Geological Sciences

Contact Information

Email: hadly@stanford.edu

Phone: (650) 498-4995 ext. lab, (650) 725-2655

Fax: (650) 723-0589

Office: GILBERT HALL, 371 Serra Mall, Stanford, California 94305-5020

Internet Links:

Hadly Lab

Group

Bio

Professor, Biology
Senior Fellow, Stanford Woods Institute for the Environment
Professor (By courtesy), Geological Sciences
Member, Bio-X

Administrative Appointments

Senior Associate Vice Provost of Undergraduate Education, VPUE (2013 - Present)

Education

Ph.D., Univ. California, Berkeley, Integrative Biology (1995)
M.S., Northern Arizona University, Quaternary Studies (1990)
B.A., Univ. Colorado, Boulder, Anthropology (1981)

Research & Scholarship

Current Research and Scholarly Interests

ELIZABETH A. HADLY
PROFESSOR, DEPARTMENT OF BIOLOGY AND DEPARTMENT OF GEOLOGICAL SCIENCES, BY COURTESY

Professor Hadly uses a combined field and laboratory approach to examine how ecological perturbations link or decouple levels of biological organization, because understanding the links among ecosystems, species, populations and genes is central to understanding how organisms exist, evolve and become extinct. She addresses problems in organismal biology from both evolutionary and ecological perspectives, primarily using extant mammals. One of the unique aspects of her overall approach is the focus on the decadal to millennial time scale, a scale that is little studied, although it is a scale that is integral to understanding links between ecology and evolution.

Projects

Living on the roof of the world: mechanisms underlying hypo tolerance in pikas, Stanford University (2012 - Present)
Tracing zoonotic disease risks and immunological adaptations in bats, humans and human commensals across the Central American countryside, Stanford University (1/1/2015 - Present)
Evolution, Extinction, and Conservation of Caribbean Mammals, Stanford University (2013 - Present)
Ecological and evolutionary aspects of the bat-infection relationship, Stanford University (February 2012 - Present)

Teaching

Courses Taught

2016-17

I, Biologist: Diversity Improves the Science of Biology
BIO 52 (Spr)
Tipping Point for Planet Earth: How Close Are We to the Edge?
BIO 5N (Aut)

Independent Study Courses

Advanced Research Laboratory in Experimental Biology
BIO 199 (Aut, Win, Spr, Sum)
Directed Individual Study in Earth Systems
EARTHSYS 297 (Aut, Win, Spr, Sum)
Directed Reading in Biology
BIO 198 (Aut, Win, Spr, Sum)
Directed Reading in Environment and Resources
ENVRES 398 (Aut, Win, Spr, Sum)
Directed Research
EARTHSYS 250 (Aut, Win, Spr, Sum)
Directed Research in Environment and Resources
ENVRES 399 (Aut, Win, Spr, Sum)
Graduate Research
BIO 300 (Aut, Win, Spr, Sum)
Honors Program in Earth Systems
EARTHSYS 199 (Aut, Win, Spr, Sum)
Internship
EARTHSYS 260 (Sum)
Out-of-Department Advanced Research Laboratory in Experimental Biology
BIO 199X (Sum)
Out-of-Department Directed Reading
BIO 198X (Aut, Win, Spr, Sum)
Out-of-Department Graduate Research
BIO 300X (Win, Spr, Sum)
Teaching of Biology
BIO 290 (Aut, Win, Spr)

2014-15

Geographic Impacts of Global Change: Mapping the Stories
BIO 128 (Spr)

Independent Study Courses

Advanced Research Laboratory in Experimental Biology
BIO 199 (Aut, Win, Spr, Sum)
Directed Individual Study in Earth Systems
EARTHSYS 297 (Aut, Win, Spr, Sum)
Directed Individual Study in Environment and Resources
ENVRES 398 (Aut, Win, Spr, Sum)
Directed Reading in Biology
BIO 198 (Aut, Win, Spr, Sum)
Directed Research
EARTHSYS 250 (Aut, Win, Spr, Sum)
Directed Research in Environment and Resources
ENVRES 399 (Aut, Win, Spr, Sum)
Graduate Research
BIO 300 (Aut, Win, Spr, Sum)
Honors Program
GES 199 (Win)
Honors Program in Earth Systems
EARTHSYS 199 (Aut, Win, Spr, Sum)
Internship
EARTHSYS 260 (Sum)
Out-of-Department Advanced Research Laboratory in Experimental Biology
BIO 199X (Sum)
Out-of-Department Directed Reading
BIO 198X (Aut, Win, Spr, Sum)
Out-of-Department Graduate Research
BIO 300X (Aut, Win, Spr, Sum)
Ph.D. Qualifying Tutorial
ENVRES 410 (Aut, Win, Spr, Sum)
Teaching of Biology
BIO 290 (Aut, Win, Spr)

2013-14

Geographic Impacts of Climate Change: Mapping the Stories
BIO 128 (Spr)

Independent Study Courses

Advanced Research Laboratory in Experimental Biology
BIO 199 (Aut, Win, Spr, Sum)
Directed Individual Study in Earth Systems
EARTHSYS 297 (Aut, Win, Spr, Sum)
Directed Individual Study in Environment and Resources
ENVRES 398 (Aut, Win, Spr, Sum)
Directed Reading in Biology
BIO 198 (Aut, Win, Spr, Sum)
Directed Research
EARTHSYS 250 (Aut, Win, Spr, Sum)
Directed Research in Environment and Resources
ENVRES 399 (Aut, Win, Spr, Sum)
Graduate Research
BIO 300 (Aut, Win, Spr, Sum)
Honors Program
GES 199 (Win, Spr)
Honors Program in Earth Systems
EARTHSYS 199 (Aut, Win, Spr, Sum)
Internship
EARTHSYS 260 (Sum)
Out-of-Department Advanced Research Laboratory in Experimental Biology
BIO 199X (Aut, Win, Spr, Sum)
Out-of-Department Directed Reading
BIO 198X (Aut, Win, Spr, Sum)
Out-of-Department Graduate Research
BIO 300X (Aut, Win, Spr, Sum)
Ph.D. Qualifying Tutorial
ENVRES 410 (Aut, Win, Spr, Sum)
Teaching of Biology
BIO 290 (Aut, Win, Spr)

Advisors/Advisees

Advisees:

Doctoral Dissertation Advisor (AC): Sergio Redondo
Doctoral (Program): Sergio Redondo
Doctoral Dissertation Reader (AC): Elora Lopez
Postdoctoral Faculty Sponsor: Amruta Varudkar

Graduate and Fellowship Programs

Biology (School of Humanities and Sciences) (Phd Program)

Publications

Genetics, morphology and ecology reveal a cryptic pika lineage in the Sikkim Himalaya. Molecular phylogenetics and evolution Dahal, N., Lissovsky, A. A., Lin, Z., Solari, K., Hadly, E. A., Zhan, X., Ramakrishnan, U. 2017; 106: 55-60
Opportunity for some, extinction for others: the fate of tetrapods in the Anthropocene EVOLUTIONARY ECOLOGY RESEARCH Solari, K. A., Frank, H. K., Frishkoff, L. O., Hsu, J. L., Kemp, M. E., Mychajliw, A. M., Hadly, E. A. 2016; 17 (6): 787-813
Getting a head in hard soils: Convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys) BMC EVOLUTIONARY BIOLOGY Marcy, A. E., Hadly, E. A., Sherratt, E., Garland, K., Weisbecker, V. 2016; 16
Climate change and habitat conversion favour the same species ECOLOGY LETTERS Frishkoff, L. O., Karp, D. S., Flanders, J. R., Zook, J., Hadly, E. A., Daily, G. C., M'Gonigle, L. K. 2016; 19 (9): 1081-1090
Rocking Earth's biodiversity cradle: challenges, advances, and prospects for conservation paleontology in the tropics JOURNAL OF VERTEBRATE PALEONTOLOGY Kemp, M. E., Hadly, E. A. 2016; 36 (5)
Anthropogenic impacts on Costa Rican bat parasitism are sex specific ECOLOGY AND EVOLUTION Frank, H. K., Mendenhall, C. D., Judson, S. D., Daily, G. C., Hadly, E. A. 2016; 6 (14): 4898-4909
Post-invasion demography of prehistoric humans in South America. Nature Goldberg, A., Mychajliw, A. M., Hadly, E. A. 2016; 532 (7598): 232-235
Early Holocene turnover, followed by stability, in a Caribbean lizard assemblage QUATERNARY RESEARCH Kemp, M. E., Hadly, E. A. 2016; 85 (2): 255-261
Variable impact of late-Quaternary megafaunal extinction in causing ecological state shifts in North and South America PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Barnosky, A. D., Lindsey, E. L., Villavicencio, N. A., Bostelmann, E., Hadly, E. A., Wanket, J., Marshall, C. R. 2016; 113 (4): 856-861
Bartonellae are Prevalent and Diverse in Costa Rican Bats and Bat Flies ZOONOSES AND PUBLIC HEALTH Judson, S. D., FRANK, H. K., Hadly, E. A. 2015; 62 (8): 609-617
Extinction biases in Quaternary Caribbean lizards GLOBAL ECOLOGY AND BIOGEOGRAPHY Kemp, M. E., Hadly, E. A. 2015; 24 (11): 1281-1289
Thermal niche predicts tolerance to habitat conversion in tropical amphibians and reptiles GLOBAL CHANGE BIOLOGY Frishkoff, L. O., Hadly, E. A., Daily, G. C. 2015; 21 (11): 3901-3916
Loss of avian phylogenetic diversity in neotropical agricultural systems SCIENCE Frishkoff, L. O., Karp, D. S., M'Gonigle, L. K., Mendenhall, C. D., Zook, J., Kremen, C., Hadly, E. A., Daily, G. C. 2014; 345 (6202): 1343-1346
Predicting biodiversity change and averting collapse in agricultural landscapes. Nature Mendenhall, C. D., Karp, D. S., Meyer, C. F., Hadly, E. A., Daily, G. C. 2014; 509 (7499): 213-217
Predicting biodiversity change and averting collapse in agricultural landscapes NATURE Mendenhall, C. D., Karp, D. S., Meyer, C. F., Hadly, E. A., Daily, G. C. 2014; 509 (7499): 213-?
A call for tiger management using "reserves" of genetic diversity. journal of heredity Bay, R. A., Ramakrishnan, U., Hadly, E. A. 2014; 105 (3): 295-302
Molecular diagnosis of bird-mediated pest consumption in tropical farmland. SpringerPlus Karp, D. S., Judson, S., Daily, G. C., Hadly, E. A. 2014; 3: 630-?
Molecular diagnosis of bird-mediated pest consumption in tropical farmland. SpringerPlus Karp, D. S., Judson, S., Daily, G. C., Hadly, E. A. 2014; 3: 630-?
Forest bolsters bird abundance, pest control and coffee yield ECOLOGY LETTERS Karp, D. S., Mendenhall, C. D., Sandi, R. F., Chaumont, N., Ehrlich, P. R., Hadly, E. A., Daily, G. C. 2013; 16 (11): 1339-1347
Asymmetrical Competition between Microtus montanus and Microtus longicaudus in the Greater Yellowstone Ecosystem AMERICAN MIDLAND NATURALIST Anich, P. S., Hadly, E. A. 2013; 170 (2): 274-286
Morphological Adaptations for Digging and Climate-Impacted Soil Properties Define Pocket Gopher (Thomomys spp.) Distributions. PloS one Marcy, A. E., Fendorf, S., Patton, J. L., Hadly, E. A. 2013; 8 (5)
Genetic diversity within vertebrate species is greater at lower latitudes EVOLUTIONARY ECOLOGY Adams, R. I., Hadly, E. A. 2013; 27 (1): 133-143
Approaching a state shift in Earth's biosphere NATURE Barnosky, A. D., Hadly, E. A., Bascompte, J., Berlow, E. L., Brown, J. H., Fortelius, M., Getz, W. M., Harte, J., Hastings, A., Marquet, P. A., Martinez, N. D., Mooers, A., Roopnarine, P., Vermeij, G., Williams, J. W., Gillespie, R., Kitzes, J., Marshall, C., Matzke, N., Mindell, D. P., Revilla, E., Smith, A. B. 2012; 486 (7401): 52-58
Ancient DNA Assessment of Tiger Salamander Population in Yellowstone National Park PLOS ONE McMenamin, S. K., Hadly, E. A. 2012; 7 (3)
Genetic variation over 10 000 years in Ctenomys: comparative phylochronology provides a temporal perspective on rarity, environmental change and demography MOLECULAR ECOLOGY Chan, Y. L., Hadly, E. A. 2011; 20 (22): 4592-4605
Predicting small-mammal responses to climatic warming: autecology, geographic range, and the Holocene fossil record GLOBAL CHANGE BIOLOGY Terry, R. C., Li, C. (., Hadly, E. A. 2011; 17 (10): 3019-3034
HIGH LEVELS OF GENE FLOW IN THE CALIFORNIA VOLE (MICROTUS CALIFORNICUS) ARE CONSISTENT ACROSS SPATIAL SCALES WESTERN NORTH AMERICAN NATURALIST Adams, R. I., Hadly, E. A. 2010; 70 (3): 296-311
Small mammal diversity loss in response to late-Pleistocene climatic change NATURE Blois, J. L., McGuire, J. L., Hadly, E. A. 2010; 465 (7299): 771-U5
Dispersal provided resilience to range collapse in a marine mammal: insights from the past to inform conservation biology MOLECULAR ECOLOGY Pinsky, M. L., Newsome, S. D., Dickerson, B. R., Fang, Y., Van Tuinen, M., Kennett, D. J., Ream, R. R., Hadly, E. A. 2010; 19 (12): 2418-2429
Isotopes reveal limited effects of middle Pleistocene climate change on the ecology of mid-sized mammals QUATERNARY INTERNATIONAL Feranec, R. S., Hadly, E. A., Paytan, A. 2010; 217 (1-2): 43-52
Developmental dynamics of Ambystoma tigrinum in a changing landscape. BMC ecology McMenamin, S. K., Hadly, E. A. 2010; 10: 10-?
Source-sink dynamics structure a common montane mammal MOLECULAR ECOLOGY O'Keefe, K., Ramakrishnan, U., van Tuinen, M., Hadly, E. A. 2009; 18 (23): 4775-4789
Biogeography, changing climates, and niche evolution PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Wake, D. B., Hadly, E. A., Ackerly, D. D. 2009; 106: 19631-19636
Niche conservatism above the species level Arthur M Sackler Colloquium of the National-Academy-of-Sciences on Biogeography, Changing Climates and Niche Evolution Hadly, E. A., Spaeth, P. A., Li, C. NATL ACAD SCIENCES. 2009: 19707–19714
Do complex population histories drive higher estimates of substitution rate in phylogenetic reconstructions? MOLECULAR ECOLOGY Ramakrishnan, U., Hadly, E. A. 2009; 18 (21): 4341-4343
PHYLOGEOGRAPHY OF MICROTUS LONGICAUDUS IN THE TECTONICALLY AND GLACIALLY DYNAMIC CENTRAL ROCKY MOUNTAINS JOURNAL OF MAMMALOGY Spaeth, P. A., Van Tuinen, M., CHAN, Y. L., Terca, D., Hadly, E. A. 2009; 90 (3): 571-584
Using phylochronology to reveal cryptic population histories: review and synthesis of 29 ancient DNA studies MOLECULAR ECOLOGY Ramakrishnan, U., Hadly, E. A. 2009; 18 (7): 1310-1330
Mammalian Response to Cenozoic Climatic Change ANNUAL REVIEW OF EARTH AND PLANETARY SCIENCES Blois, J. L., Hadly, E. A. 2009; 37: 181-208
Stable isotopes reveal seasonal competition for resources between late Pleistocene bison (Bison) and horse (Equus) from Rancho La Brea, southern California PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY Feranec, R. S., Hadly, E. A., Paytan, A. 2009; 271 (1-2): 153-160
Climatic change and wetland desiccation cause amphibian decline in Yellowstone National Park PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA McMenamin, S. K., Hadly, E. A., Wright, C. K. 2008; 105 (44): 16988-16993
Fire and ice: genetic structure of the Uinta ground squirrel (Spermophilus armatus) across the Yellowstone hotspot MOLECULAR ECOLOGY van Tuinen, M., O'Keefe, K., Ramakrishnan, U., Hadly, E. A. 2008; 17 (7): 1776-1788
The role of molecular genetics in sculpting the future of integrative biogeography PROGRESS IN PHYSICAL GEOGRAPHY Riddle, B. R., Dawson, M. N., Hadly, E. A., Hafner, D. J., Hickerson, M. J., Mantooth, S. J., Yoder, A. D. 2008; 32 (2): 173-202
Environmental influences on spatial and temporal patterns of body-size variation in California ground squirrels (Spermophilus beecheyi) JOURNAL OF BIOGEOGRAPHY Blois, J. L., Feranec, R. S., Hadly, E. A. 2008; 35 (4): 602-613
Determining landscape use of Holocene mammals using strontium isotopes OECOLOGIA Feranec, R. S., Hadly, E. A., Paytan, A. 2007; 153 (4): 943-950
The shifting baseline of northern fur seal ecology in the northeast Pacific Ocean PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Newsome, S. D., Etnier, M. A., Gifford-Gonzalez, D., Phillips, D. L., van Tuinen, M., Hadly, E. A., Costa, D. P., Kennett, D. J., Guilderson, T. P., Koch, P. L. 2007; 104 (23): 9709-9714
Non-random patterns in the Yellowstone ecosystem: inferences from mammalian body size, order and biogeographical affinity GLOBAL ECOLOGY AND BIOGEOGRAPHY Bruzgul, J. E., Hadly, E. A. 2007; 16 (2): 139-148
Radiocarbon dates from the pleistocene fossil deposits of Samwel Cave, Shasta County, California, USA RADIOCARBON Feranec, R. S., Hadly, E. A., Blois, J. L., Barnosky, A. D., Paytan, A. 2007; 49 (1): 117-121
Bayesian estimation of the timing and severity of a population bottleneck from ancient DNA PLOS GENETICS Chan, Y. L., Anderson, C. N., Hadly, E. A. 2006; 2 (4): 451-460
Ancient DNA reveals Holocene loss of genetic diversity in a South American rodent BIOLOGY LETTERS Chan, Y. L., Lacey, E. A., Pearson, O. P., Hadly, E. A. 2005; 1 (4): 423-426
Community inertia of quaternary small mammal assemblages in North America PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA McGill, B. J., Hadly, E. A., Maurer, B. A. 2005; 102 (46): 16701-16706
Detecting past population bottlenecks using temporal genetic data MOLECULAR ECOLOGY Ramakrishnan, U., Hadly, E. A., Mountain, J. L. 2005; 14 (10): 2915-2922
Serial SimCoal: A population genetics model for data from multiple populations and points in time BIOINFORMATICS Anderson, C. N., Ramakrishnan, U., CHAN, Y. L., Hadly, E. A. 2005; 21 (8): 1733-1734
Temporal response of the tiger salamander (Ambystoma tigrinum) to 3,000 years of climatic variation. BMC ecology Bruzgul, J. E., Long, W., Hadly, E. A. 2005; 5: 7-?
Studying the effect of environmental change on biotic evolution: past genetic contributions, current work and future directions PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY A-MATHEMATICAL PHYSICAL AND ENGINEERING SCIENCES van Tuinen, M., Ramakrishnan, U., Hadley, E. A. 2004; 362 (1825): 2795-2820
Genetic response to climatic change: Insights from ancient DNA and phylochronology PLOS BIOLOGY Hadly, E. A., Ramakrishnan, U., CHAN, Y. L., Van Tuinen, M., O'Keefe, K., Spaeth, P. A., Conroy, C. J. 2004; 2 (10): 1600-1609
Similarities in body size distributions of small-bodied flying vertebrates EVOLUTIONARY ECOLOGY RESEARCH Maurer, B. A., Brown, J. H., Dayan, T., Enquist, B. J., Ernest, S. K., Hadly, E. A., Haskell, J. P., Jablonski, D., Jones, K. E., Kaufman, D. M., Lyons, S. K., Niklas, K. J., Porter, W. P., Roy, K., Smith, F. A., Tiffney, B., Willig, M. R. 2004; 6 (6): 783-797
Error in estimation of rate and time inferred from the early amniote fossil record and avian molecular clocks JOURNAL OF MOLECULAR EVOLUTION van Tuinen, M., Hadly, E. A. 2004; 59 (2): 267-276
Similarity of mammalian body size across the taxonomic hierarchy and across space and time AMERICAN NATURALIST Smith, F. A., Brown, J. H., Haskell, J. P., Lyons, S. K., Alroy, J., Charnov, E. L., Dayan, T., Enquist, B. J., Ernest, S. K., Hadly, E. A., Jones, K. E., Kaufman, D. M., Marquet, P. A., Maurer, B. A., Niklas, K. J., Porter, W. P., Tiffney, B., Willig, M. R. 2004; 163 (5): 672-691
Calibration and error in placental molecular clocks: A conservative approach using the cetartiodactyl fossil record JOURNAL OF HEREDITY van Tuinen, M., Hadly, E. A. 2004; 95 (3): 200-208
Thermodynamic and metabolic effects on the scaling of production and population energy use ECOLOGY LETTERS Ernest, S. K., Enquist, B. J., Brown, J. H., Charnov, E. L., Gillooly, J. F., Savage, V., White, E. P., Smith, F. A., Hadly, E. A., Haskell, J. P., Lyons, S. K., Maurer, B. A., Niklas, K. J., Tiffney, B. 2003; 6 (11): 990-995
The interface of paleontology and mammalogy: Past, present, and future JOURNAL OF MAMMALOGY Hadly, E. A. 2003; 84 (2): 347-353
Ancient DNA evidence of prolonged population persistence with negligible genetic diversity in an endemic tuco-tuco (Ctenomys sociabilis) JOURNAL OF MAMMALOGY Hadly, E. A., Van Tuinen, M., Chan, Y., Heiman, K. 2003; 84 (2): 403-417
Mammalian response to global warming on varied temporal scales JOURNAL OF MAMMALOGY Barnosky, A. D., Hadly, E. A., Bell, C. J. 2003; 84 (2): 354-368
Mapping the origin of faunal assemblages using strontium isotopes PALEOBIOLOGY Porder, S., Paytan, A., Hadly, E. A. 2003; 29 (2): 197-204
Temperate terrestrial vertebrate faunas in North and South America: Interplay of ecology, evolution, and geography with biodiversity CONSERVATION BIOLOGY Barnosky, A. D., Hadly, E. A., Maurer, B. A., Christie, M. I. 2001; 15 (3): 658-674
Spatial and temporal patterns of species diversity in montane mammal communities of western North America EVOLUTIONARY ECOLOGY RESEARCH Hadly, E. A., Maurer, B. A. 2001; 3 (4): 477-486
Fidelity of terrestrial vertebrate fossils to a modern ecosystem PALAEOGEOGRAPHY PALAEOCLIMATOLOGY PALAEOECOLOGY Hadly, E. A. 1999; 149 (1-4): 389-409
A genetic record of population isolation in pocket gophers during Holocene climatic change PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA Hadly, E. A., Kohn, M. H., Leonard, J. A., Wayne, R. K. 1998; 95 (12): 6893-6896

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Elizabeth Hadly

Paul S. and Billie Achilles Professor in Environmental Biology, Senior Fellow at the Woods Institute for the Environment and Professor, by courtesy, of Geological Sciences

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